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- QuPath
QuPath is cross-platform, user-friendly open source software for digital pathology and whole slide image analysis, written using JavaFX QuPath has also been designed to be developer-friendly, and combines an extensible design with powerful scripting tools
- Annotating making measurements | QuPath EMBO 2021
Learn how to annotate images make basic measurements in QuPath - handy for almost every use case (including ground truth data for deep learning)
- Overview (QuPath 0. 5. 1) - GitHub Pages
ImageJ plugins to install within QuPath's embedded ImageJ instance to enable exchanging ROIs and objects
- API Help (QuPath 0. 5. 1) - GitHub Pages
Navigation Starting from the Overview page, you can browse the documentation using the links in each page, and in the navigation bar at the top of each page The Index and Search box allow you to navigate to specific declarations and summary pages, including: All Packages, All Classes and Interfaces Search You can search for definitions of modules, packages, types, fields, methods, system
- QuPath practical workshop material - QuPath EMBO 2021
QuPath should be straightforward to install and work on most computers We recommend running it locally to make the most of interactively working with large images If you get stuck, you can find help through: the QuPath documentation, which includes installation instructions; the QuPath user forum
- ROI (QuPath 0. 5. 1) - GitHub Pages
Base interface for defining regions of interest (ROIs) within QuPath In general, anything that returns a coordinate should be defined in terms of pixels from the top left of the full-resolution image
- PathObject (QuPath 0. 5. 1) - GitHub Pages
Fundamental object of interest in QuPath Used as a base class for annotations, detections, cells, TMA cores, tiles
- QuPathGUI (QuPath 0. 5. 1) - GitHub Pages
Static method to launch QuPath from a JavaFX application This is typically expected to be called in an Application start(Stage) method, although could potentially be called later from another JavaFX application Afterwards, calls to getInstance() will return the QuPath instance
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